
I am a Research Scientist at the King Abdullah University of Science and Technology (KAUST), in the Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, working in the Structural and Functional Bioinformatics group under the mentorship of Prof. Xin Gao. (KAUST profile)
My research focuses on agentic AI systems for scientific discovery, protein design, and AI for synthetic biology. I currently direct enzyme design projects, and over the course of my career I have explored chemical design, antibody design, peptide design, phylogenetics, cancer genomics, and synthetic biology. I also bring industry experience from big-data companies and AI startups, where I worked as a data scientist and product manager.
Representative works include AB-Gen, HELM-GPT, and a ChatGPT-like solution for protein design.
📫 Email: xiaopeng.xu {at} kaust.edu.sa
Education
- 2020 – 2024, Ph.D., Computer Science under the supervision of Prof. Xin Gao, King Abdullah University of Science and Technology (KAUST)
- 2013 – 2015, M.S., Computer Science under the supervision of Prof. Xin Gao, King Abdullah University of Science and Technology (KAUST)
- 2009 – 2013, B.S., Bioinformatics under the supervision of Prof. An-Yuan Guo and Dr. Qian Ge, Huazhong University of Science & Technology (HUST)
Experience
- 2026 – Present, Research Scientist, KAUST
- 2024 – 2026, Postdoctoral Research Fellow, KAUST
- 2020 – 2021, Product Manager of Sensors Analytics, Sensors Data
- 2017 – 2020, Product Manager of GeneDock Lab, Link & Analyzer, GeneDock
- 2015 – 2017, Data Scientist, MiningLamp
- 2012 – 2013, Bioinformatics Analyst at Unit of Synthetic Biology and Cancer Research Group, BGI
Academic Services
Reviewer
| Journal / Conference / Funding | # Papers Reviewed |
|---|---|
| Nature Machine Intelligence | 1 |
| Nature Computer Science | 1 |
| Nature Communications | 1 |
| Genomics Proteomics and Bioinformatics | 1 |
| Bioinformatics | 4 |
| Pattern Recognition | 3 |
| ACS Synthetic Biology | 2 |
| IEEE Internet of Things Journal | 1 |
| RECOMB | 1 |
| International Journal of Molecular Sciences | 2 |
| Heliyon | 1 |
| KAUST Supercomputing Laboratory (KSL) Project Proposal | 2 |
Xiaopeng Xu