About

Xiaopeng Xu

I am a Research Scientist at the King Abdullah University of Science and Technology (KAUST), in the Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, working in the Structural and Functional Bioinformatics group under the mentorship of Prof. Xin Gao. (KAUST profile)

My research focuses on agentic AI systems for scientific discovery, protein design, and AI for synthetic biology. I currently direct enzyme design projects, and over the course of my career I have explored chemical design, antibody design, peptide design, phylogenetics, cancer genomics, and synthetic biology. I also bring industry experience from big-data companies and AI startups, where I worked as a data scientist and product manager.

Representative works include AB-Gen, HELM-GPT, and a ChatGPT-like solution for protein design.

📫 Email: xiaopeng.xu {at} kaust.edu.sa

Education

Experience

  • 2026 – Present, Research Scientist, KAUST
  • 2024 – 2026, Postdoctoral Research Fellow, KAUST
  • 2020 – 2021, Product Manager of Sensors Analytics, Sensors Data
  • 2017 – 2020, Product Manager of GeneDock Lab, Link & Analyzer, GeneDock
  • 2015 – 2017, Data Scientist, MiningLamp
  • 2012 – 2013, Bioinformatics Analyst at Unit of Synthetic Biology and Cancer Research Group, BGI

Academic Services

Reviewer

Journal / Conference / Funding# Papers Reviewed
Nature Machine Intelligence1
Nature Computer Science1
Nature Communications1
Genomics Proteomics and Bioinformatics1
Bioinformatics4
Pattern Recognition3
ACS Synthetic Biology2
IEEE Internet of Things Journal1
RECOMB1
International Journal of Molecular Sciences2
Heliyon1
KAUST Supercomputing Laboratory (KSL) Project Proposal2